kschan.cpp File Reference

#include <../../nrnconf.h>
#include <string.h>
#include <stdlib.h>
#include <math.h>
#include "nrnoc2iv.h"
#include "classreg.h"
#include "kschan.h"
#include "kssingle.h"
#include "ocnotify.h"
#include "parse.hpp"
#include "nrniv_mf.h"

Go to the source code of this file.

Macros
#define	NSingleIndex   0
#define	nt_dt   nrn_threads->_dt

Typedefs
using	KSChanList = std::vector< KSChan * >

Functions
char *	hoc_symbol_units (Symbol *, const char *)
void	nrn_mk_table_check ()
spREAL *	spGetElement (char *, int, int)
static void	check_objtype (Object *o, Symbol *s)
static void	unref (Object *obj)
static void	chkobj (void *v)
static void	check_table_thread_ (Memb_list *, std::size_t, Datum *, Datum *, double *, NrnThread *vnt, int type, neuron::model_sorted_token const &)
static void	nrn_alloc (Prop *prop)
static void	nrn_init (neuron::model_sorted_token const &, NrnThread *nt, Memb_list *ml, int type)
static void	nrn_cur (neuron::model_sorted_token const &, NrnThread *nt, Memb_list *ml, int type)
static void	nrn_jacob (neuron::model_sorted_token const &, NrnThread *nt, Memb_list *ml, int type)
static void	nrn_state (neuron::model_sorted_token const &, NrnThread *nt, Memb_list *ml, int type)
static int	ode_count (int type)
static void	ode_map (Prop *prop, int ieq, neuron::container::data_handle< double > *pv, neuron::container::data_handle< double > *pvdot, double *atol, int type)
static void	ode_spec (neuron::model_sorted_token const &token, NrnThread *, Memb_list *ml, int type)
static void	ode_matsol (neuron::model_sorted_token const &token, NrnThread *nt, Memb_list *ml, int type)
static void	singchan (NrnThread *nt, Memb_list *ml, int type)
static void *	hoc_create_pnt (Object *ho)
static void	hoc_destroy_pnt (void *v)
static double	hoc_loc_pnt (void *v)
static double	hoc_has_loc (void *v)
static double	hoc_get_loc_pnt (void *v)
static double	hoc_nsingle (void *v)
void	kschan_cvode_single_update ()
static double	ks_setstructure (void *v)
static double	ks_remove_state (void *v)
static double	ks_remove_transition (void *v)
static double	ks_ngate (void *v)
static double	ks_nstate (void *v)
static double	ks_ntrans (void *v)
static double	ks_nligand (void *v)
static double	ks_is_point (void *v)
static double	ks_single (void *v)
static double	ks_iv_type (void *v)
static double	ks_gmax (void *v)
static double	ks_erev (void *v)
static double	ks_vres (void *v)
static double	ks_rseed (void *v)
static double	ks_usetable (void *v)
static Object **	temp_objvar (const char *name, void *v, Object **obp)
static Object **	ks_add_hhstate (void *v)
static Object **	ks_add_ksstate (void *v)
static Object **	ks_add_transition (void *v)
static Object **	ks_trans (void *v)
static Object **	ks_state (void *v)
static Object **	ks_gate (void *v)
static const char **	ks_name (void *v)
static const char **	ks_ion (void *v)
static const char **	ks_ligand (void *v)
static double	kss_frac (void *v)
static double	kss_index (void *v)
static Object **	kss_gate (void *v)
static const char **	kss_name (void *v)
static double	ksg_nstate (void *v)
static double	ksg_power (void *v)
static double	ksg_sindex (void *v)
static double	ksg_index (void *v)
static double	kst_set_f (void *v)
static double	kst_index (void *v)
static double	kst_type (void *v)
static double	kst_ftype (void *v)
static double	kst_ab (void *v)
static double	kst_inftau (void *v)
static double	kst_f (void *v)
static Object **	kst_src (void *v)
static Object **	kst_target (void *v)
static Object **	kst_parm (void *v)
static const char **	kst_ligand (void *v)
static double	kst_stoichiometry (void *v)
static double	ks_pr (void *v)
static void *	ks_cons (Object *o)
static void	ks_destruct (void *)
static void *	kss_cons (Object *o)
static void	kss_destruct (void *)
static void *	ksg_cons (Object *o)
static void	ksg_destruct (void *)
static void *	kst_cons (Object *o)
static void	kst_destruct (void *)
void	KSChan_reg ()
static int	ksusing (int type)

Variables
static KSChanList *	channels
static Symbol *	ksstate_sym
static Symbol *	ksgate_sym
static Symbol *	kstrans_sym
static Member_func	member_func []
static Member_func	ks_dmem []
static Member_ret_obj_func	ks_omem []
static Member_ret_str_func	ks_smem []
static Member_func	kss_dmem [] = {{"frac", kss_frac}, {"index", kss_index}, {nullptr, nullptr}}
static Member_ret_obj_func	kss_omem [] = {{"gate", kss_gate}, {nullptr, nullptr}}
static Member_ret_str_func	kss_smem [] = {{"name", kss_name}, {nullptr, nullptr}}
static Member_func	ksg_dmem []
static Member_func	kst_dmem []
static Member_ret_obj_func	kst_omem []
static Member_ret_str_func	kst_smem [] = {{"ligand", kst_ligand}, {nullptr, nullptr}}
static const char *	m_kschan_pat [] = {"0", "kschan", "gmax", 0, "g", "i", 0, 0, 0}
static const char *	m_kschan [9]

Macro Definition Documentation

NSingleIndex

#define NSingleIndex   0

Definition at line 13 of file kschan.cpp.

nt_dt

#define nt_dt   nrn_threads->_dt

Definition at line 26 of file kschan.cpp.

Typedef Documentation

KSChanList

using KSChanList = std::vector<KSChan*>

Definition at line 15 of file kschan.cpp.

Function Documentation

check_objtype()

static void check_objtype ( Object *  o, Symbol *  s  )

static

Definition at line 28 of file kschan.cpp.

check_table_thread_()

static void check_table_thread_ ( Memb_list *  , std::size_t  , Datum *  , Datum *  , double *  , NrnThread *  vnt, int  type, neuron::model_sorted_token const &    )

static

Definition at line 52 of file kschan.cpp.

chkobj()

static void chkobj ( void *  v )

static

Definition at line 46 of file kschan.cpp.

hoc_create_pnt()

static void* hoc_create_pnt ( Object *  ho )

static

Definition at line 126 of file kschan.cpp.

hoc_destroy_pnt()

static void hoc_destroy_pnt ( void *  v )

static

Definition at line 129 of file kschan.cpp.

hoc_get_loc_pnt()

static double hoc_get_loc_pnt ( void *  v )

static

Definition at line 155 of file kschan.cpp.

hoc_has_loc()

static double hoc_has_loc ( void *  v )

static

Definition at line 152 of file kschan.cpp.

hoc_loc_pnt()

static double hoc_loc_pnt ( void *  v )

static

Definition at line 148 of file kschan.cpp.

hoc_nsingle()

static double hoc_nsingle ( void *  v )

static

Definition at line 158 of file kschan.cpp.

hoc_symbol_units()

char* hoc_symbol_units	(	Symbol *	sym,
		const char *	units
	)

Definition at line 128 of file code2.cpp.

ks_add_hhstate()

static Object** ks_add_hhstate ( void *  v )

static

Definition at line 321 of file kschan.cpp.

ks_add_ksstate()

static Object** ks_add_ksstate ( void *  v )

static

Definition at line 327 of file kschan.cpp.

ks_add_transition()

static Object** ks_add_transition ( void *  v )

static

Definition at line 341 of file kschan.cpp.

ks_cons()

static void* ks_cons ( Object *  o )

static

Definition at line 754 of file kschan.cpp.

ks_destruct()

static void ks_destruct ( void *  )

static

Definition at line 774 of file kschan.cpp.

ks_erev()

static double ks_erev ( void *  v )

static

Definition at line 267 of file kschan.cpp.

ks_gate()

static Object** ks_gate ( void *  v )

static

Definition at line 388 of file kschan.cpp.

ks_gmax()

static double ks_gmax ( void *  v )

static

Definition at line 258 of file kschan.cpp.

ks_ion()

static const char** ks_ion ( void *  v )

static

Definition at line 404 of file kschan.cpp.

ks_is_point()

static double ks_is_point ( void *  v )

static

Definition at line 233 of file kschan.cpp.

ks_iv_type()

static double ks_iv_type ( void *  v )

static

Definition at line 246 of file kschan.cpp.

ks_ligand()

static const char** ks_ligand ( void *  v )

static

Definition at line 414 of file kschan.cpp.

ks_name()

static const char** ks_name ( void *  v )

static

Definition at line 394 of file kschan.cpp.

ks_ngate()

static double ks_ngate ( void *  v )

static

Definition at line 213 of file kschan.cpp.

ks_nligand()

static double ks_nligand ( void *  v )

static

Definition at line 228 of file kschan.cpp.

ks_nstate()

static double ks_nstate ( void *  v )

static

Definition at line 218 of file kschan.cpp.

ks_ntrans()

static double ks_ntrans ( void *  v )

static

Definition at line 223 of file kschan.cpp.

ks_pr()

static double ks_pr ( void *  v )

static

Definition at line 634 of file kschan.cpp.

ks_remove_state()

static double ks_remove_state ( void *  v )

static

Definition at line 182 of file kschan.cpp.

ks_remove_transition()

static double ks_remove_transition ( void *  v )

static

Definition at line 197 of file kschan.cpp.

ks_rseed()

static double ks_rseed ( void *  v )

static

Definition at line 283 of file kschan.cpp.

ks_setstructure()

static double ks_setstructure ( void *  v )

static

Definition at line 176 of file kschan.cpp.

ks_single()

static double ks_single ( void *  v )

static

Definition at line 238 of file kschan.cpp.

ks_state()

static Object** ks_state ( void *  v )

static

Definition at line 382 of file kschan.cpp.

ks_trans()

static Object** ks_trans ( void *  v )

static

Definition at line 360 of file kschan.cpp.

ks_usetable()

static double ks_usetable ( void *  v )

static

Definition at line 290 of file kschan.cpp.

ks_vres()

static double ks_vres ( void *  v )

static

Definition at line 276 of file kschan.cpp.

kschan_cvode_single_update()

void kschan_cvode_single_update

(

)

Definition at line 172 of file kschan.cpp.

KSChan_reg()

void KSChan_reg

(

)

Definition at line 797 of file kschan.cpp.

ksg_cons()

static void* ksg_cons ( Object *  o )

static

Definition at line 786 of file kschan.cpp.

ksg_destruct()

static void ksg_destruct ( void *  )

static

Definition at line 790 of file kschan.cpp.

ksg_index()

static double ksg_index ( void *  v )

static

Definition at line 478 of file kschan.cpp.

ksg_nstate()

static double ksg_nstate ( void *  v )

static

Definition at line 456 of file kschan.cpp.

ksg_power()

static double ksg_power ( void *  v )

static

Definition at line 462 of file kschan.cpp.

ksg_sindex()

static double ksg_sindex ( void *  v )

static

Definition at line 472 of file kschan.cpp.

kss_cons()

static void* kss_cons ( Object *  o )

static

Definition at line 781 of file kschan.cpp.

kss_destruct()

static void kss_destruct ( void *  )

static

Definition at line 785 of file kschan.cpp.

kss_frac()

static double kss_frac ( void *  v )

static

Definition at line 421 of file kschan.cpp.

kss_gate()

static Object** kss_gate ( void *  v )

static

Definition at line 436 of file kschan.cpp.

kss_index()

static double kss_index ( void *  v )

static

Definition at line 430 of file kschan.cpp.

kss_name()

static const char** kss_name ( void *  v )

static

Definition at line 445 of file kschan.cpp.

kst_ab()

static double kst_ab ( void *  v )

static

Definition at line 539 of file kschan.cpp.

kst_cons()

static void* kst_cons ( Object *  o )

static

Definition at line 791 of file kschan.cpp.

kst_destruct()

static void kst_destruct ( void *  )

static

Definition at line 795 of file kschan.cpp.

kst_f()

static double kst_f ( void *  v )

static

Definition at line 559 of file kschan.cpp.

kst_ftype()

static double kst_ftype ( void *  v )

static

Definition at line 524 of file kschan.cpp.

kst_index()

static double kst_index ( void *  v )

static

Definition at line 502 of file kschan.cpp.

kst_inftau()

static double kst_inftau ( void *  v )

static

Definition at line 549 of file kschan.cpp.

kst_ligand()

static const char** kst_ligand ( void *  v )

static

Definition at line 610 of file kschan.cpp.

kst_parm()

static Object** kst_parm ( void *  v )

static

Definition at line 585 of file kschan.cpp.

kst_set_f()

static double kst_set_f ( void *  v )

static

Definition at line 484 of file kschan.cpp.

kst_src()

static Object** kst_src ( void *  v )

static

Definition at line 571 of file kschan.cpp.

kst_stoichiometry()

static double kst_stoichiometry ( void *  v )

static

Definition at line 626 of file kschan.cpp.

kst_target()

static Object** kst_target ( void *  v )

static

Definition at line 578 of file kschan.cpp.

kst_type()

static double kst_type ( void *  v )

static

Definition at line 508 of file kschan.cpp.

ksusing()

static int ksusing ( int  type )

static

Definition at line 3151 of file kschan.cpp.

nrn_alloc()

static void nrn_alloc ( Prop *  prop )

static

Definition at line 64 of file kschan.cpp.

nrn_cur()

static void nrn_cur ( neuron::model_sorted_token const &  , NrnThread *  nt, Memb_list *  ml, int  type  )

static

Definition at line 75 of file kschan.cpp.

nrn_init()

static void nrn_init ( neuron::model_sorted_token const &  , NrnThread *  nt, Memb_list *  ml, int  type  )

static

Definition at line 69 of file kschan.cpp.

nrn_jacob()

static void nrn_jacob ( neuron::model_sorted_token const &  , NrnThread *  nt, Memb_list *  ml, int  type  )

static

Definition at line 81 of file kschan.cpp.

nrn_mk_table_check()

void nrn_mk_table_check

(

void

)

Definition at line 781 of file multicore.cpp.

nrn_state()

static void nrn_state ( neuron::model_sorted_token const &  , NrnThread *  nt, Memb_list *  ml, int  type  )

static

Definition at line 87 of file kschan.cpp.

ode_count()

static int ode_count ( int  type )

static

Definition at line 93 of file kschan.cpp.

ode_map()

static void ode_map ( Prop *  prop, int  ieq, neuron::container::data_handle< double > *  pv, neuron::container::data_handle< double > *  pvdot, double *  atol, int  type  )

static

Definition at line 98 of file kschan.cpp.

ode_matsol()

static void ode_matsol ( neuron::model_sorted_token const &  token, NrnThread *  nt, Memb_list *  ml, int  type  )

static

Definition at line 113 of file kschan.cpp.

ode_spec()

static void ode_spec ( neuron::model_sorted_token const &  token, NrnThread *  , Memb_list *  ml, int  type  )

static

Definition at line 108 of file kschan.cpp.

singchan()

static void singchan ( NrnThread *  nt, Memb_list *  ml, int  type  )

static

Definition at line 121 of file kschan.cpp.

spGetElement()

spREAL* spGetElement	(	char *	eMatrix,
		int	Row,
		int	Col
	)

Definition at line 151 of file spbuild.cpp.

temp_objvar()

static Object** temp_objvar ( const char *  name, void *  v, Object **  obp  )

static

Definition at line 309 of file kschan.cpp.

unref()

static void unref ( Object *  obj )

static

Definition at line 39 of file kschan.cpp.

Variable Documentation

channels

KSChanList* channels

static

Definition at line 16 of file kschan.cpp.

ks_dmem

Member_func ks_dmem[]

static

Initial value:

= {
    
    {"setstructure", ks_setstructure},
 
    {"remove_state", ks_remove_state},
    {"remove_transition", ks_remove_transition},
 
    {"ngate", ks_ngate},
    {"nstate", ks_nstate},
    {"ntrans", ks_ntrans},
    {"nligand", ks_nligand},
    {"is_point", ks_is_point},
    {"single", ks_single},
    {"pr", ks_pr},
 
    {"iv_type", ks_iv_type},
    {"gmax", ks_gmax},
    {"erev", ks_erev},
    {"vres", ks_vres},
    {"rseed", ks_rseed},
    {"usetable", ks_usetable},
    {nullptr, nullptr}}

Definition at line 689 of file kschan.cpp.

ks_omem

Member_ret_obj_func ks_omem[]

static

Initial value:

= {{"add_hhstate", ks_add_hhstate},
                                        {"add_ksstate", ks_add_ksstate},
                                        {"add_transition", ks_add_transition},
                                        {"trans", ks_trans},
                                        {"state", ks_state},
                                        {"gate", ks_gate},
                                        {nullptr, nullptr}}

Definition at line 712 of file kschan.cpp.

ks_smem

Member_ret_str_func ks_smem[]

static

Initial value:

= {{"name", ks_name},
                                        {"ion", ks_ion},
                                        {"ligand", ks_ligand},
                                        {nullptr, nullptr}}

Definition at line 720 of file kschan.cpp.

ksg_dmem

Member_func ksg_dmem[]

static

Initial value:

= {{"nstate", ksg_nstate},
                                 {"power", ksg_power},
                                 {"sindex", ksg_sindex},
                                 {"index", ksg_index},
                                 {nullptr, nullptr}}

Definition at line 731 of file kschan.cpp.

ksgate_sym

Symbol* ksgate_sym

static

Definition at line 23 of file kschan.cpp.

kss_dmem

Member_func kss_dmem[] = {{"frac", kss_frac}, {"index", kss_index}, {nullptr, nullptr}}

static

Definition at line 725 of file kschan.cpp.

kss_omem

Member_ret_obj_func kss_omem[] = {{"gate", kss_gate}, {nullptr, nullptr}}

static

Definition at line 727 of file kschan.cpp.

kss_smem

Member_ret_str_func kss_smem[] = {{"name", kss_name}, {nullptr, nullptr}}

static

Definition at line 729 of file kschan.cpp.

ksstate_sym

Symbol* ksstate_sym

static

Definition at line 22 of file kschan.cpp.

kst_dmem

Member_func kst_dmem[]

static

Initial value:

= {{"set_f", kst_set_f},
                                 {"index", kst_index},
                                 {"type", kst_type},
                                 {"ftype", kst_ftype},
                                 {"ab", kst_ab},
                                 {"inftau", kst_inftau},
                                 {"f", kst_f},
                                 {"stoichiometry", kst_stoichiometry},
                                 {nullptr, nullptr}}

Definition at line 737 of file kschan.cpp.

kst_omem

Member_ret_obj_func kst_omem[]

static

Initial value:

= {{"src", kst_src},
                                         {"target", kst_target},
                                         {"parm", kst_parm},
                                         {nullptr, nullptr}}

Definition at line 747 of file kschan.cpp.

kst_smem

Member_ret_str_func kst_smem[] = {{"ligand", kst_ligand}, {nullptr, nullptr}}

static

Definition at line 752 of file kschan.cpp.

kstrans_sym

Symbol* kstrans_sym

static

Definition at line 24 of file kschan.cpp.

m_kschan

const char* m_kschan[9]

static

Definition at line 823 of file kschan.cpp.

m_kschan_pat

const char* m_kschan_pat[] = {"0", "kschan", "gmax", 0, "g", "i", 0, 0, 0}

static

Definition at line 822 of file kschan.cpp.

member_func

Member_func member_func[]

static

Initial value:

= {{"loc", hoc_loc_pnt},
                                    {"has_loc", hoc_has_loc},
                                    {"get_loc", hoc_get_loc_pnt},
                                    {"nsingle", hoc_nsingle},
                                    {nullptr, nullptr}}

Definition at line 166 of file kschan.cpp.