#include <kschan.h>

Public Member Functions
	KSChan (Object *, bool is_point=false)

virtual	~KSChan ()

virtual void	alloc (Prop *)

virtual void	init (NrnThread , Memb_list )

virtual void	state (NrnThread , Memb_list )

virtual void	cur (NrnThread , Memb_list )

virtual void	jacob (NrnThread , Memb_list )

void	add_channel (const char **)

virtual int	count ()

virtual void	map (Prop , int, neuron::container::data_handle< double > , neuron::container::data_handle< double > , double )

virtual void	spec (Memb_list *)

virtual void	matsol (NrnThread , Memb_list )

virtual void	cv_sc_update (NrnThread , Memb_list )

double	conductance (double gmax, Memb_list *ml, std::size_t instance, std::size_t offset)

const char *	state (int index)

int	trans_index (int src, int target)

int	gate_index (int state_index)

bool	is_point ()

bool	is_single ()

void	set_single (bool, bool update=true)

void	destroy_pnt (Point_process *)

int	nsingle (Point_process *)

void	nsingle (Point_process *, int)

double	alpha (double v, int, int)

double	beta (double v, int, int)

void	setstructure (Vect *)

void	setname (const char *)

void	setsname (int, const char *)

void	setion (const char *)

void	settype (KSTransition , int type, const char )

void	setivrelation (int)

KSState *	add_hhstate (const char *)

KSState *	add_ksstate (int igate, const char *)

void	remove_state (int)

KSTransition *	add_transition (int src, int target)

void	remove_transition (int)

void	setcond ()

void	power (KSGateComplex *, int)

void	usetable (bool, int size, double vmin, double vmax)

void	usetable (bool)

int	usetable (double vmin, double vmax)

bool	usetable ()

void	check_table_thread (NrnThread *)

void	parm_default_fill ()

Public Attributes
std::string	name_

std::string	ion_

double	gmax_deflt_

double	erev_deflt_

int	cond_model_

KSIv *	iv_relation_

int	ngate_

int	ntrans_

int	ivkstrans_

int	iligtrans_

int	nhhstate_

int	nksstate_

int	nstate_

KSState *	state_

KSGateComplex *	gc_

KSTransition *	trans_

Symbol *	ion_sym_

int	nligand_

Symbol **	ligands_

Object *	obj_

KSSingle *	single_

Private Member Functions
void	free1 ()

void	setupmat ()

void	fillmat (double v, Datum *pd)

void	mat_dt (double dt, Memb_list *ml, std::size_t instance, std::size_t offset)

void	solvemat (Memb_list *, std::size_t instance, std::size_t offset)

void	mulmat (Memb_list *ml, std::size_t instance, std::size_t offset_s, std::size_t offset_ds)

void	ion_consist ()
	Almost obsolete: No longer allow KSChan structure changes when instances exist. More...

void	ligand_consist (int, int, Prop , Node )

Prop *	needion (Symbol , Node , Prop *)

void	sname_install ()

Symbol *	looksym (const char , Symbol tmplt=NULL)

Symbol *	installsym (const char , int, Symbol tmplt=NULL)

void	freesym (Symbol , Symbol tmplt=NULL)

Symbol **	newppsym (int)

void	delete_schan_node_data ()

void	alloc_schan_node_data ()

void	update_prop ()

void	err_if_has_instances () const
	Error if instances exist. More...

void	register_data_fields ()

KSState *	state_insert (int i, const char *name, double frac)

void	state_remove (int i)

KSGateComplex *	gate_insert (int ig, int is, int power)

void	gate_remove (int i)

KSTransition *	trans_insert (int i, int src, int target)

void	trans_remove (int i)

void	check_struct ()

Private Attributes
int	state_size_

int	gate_size_

int	trans_size_

bool	is_point_

bool	is_single_

int	pointtype_

int	mechtype_

int	cvode_ieq_

Symbol *	mechsym_

Symbol *	rlsym_

char *	mat_

double **	elms_

double **	diag_

int	dsize_

int	psize_

int	soffset_

int	gmaxoffset_

int	ppoff_

double	vmin_

double	vmax_

double	dvinv_

double	dtsav_

int	hh_tab_size_

bool	usetable_

std::vector< double >	parm_default {}

Detailed Description

Definition at line 336 of file kschan.h.

Constructor & Destructor Documentation

◆ KSChan()

KSChan::KSChan	(	Object *	obj,
		bool	is_point = `false`
	)

Definition at line 863 of file kschan.cpp.

◆ ~KSChan()

virtual KSChan::~KSChan ( )

inlinevirtual

Definition at line 339 of file kschan.h.

Member Function Documentation

◆ add_channel()

void KSChan::add_channel ( const char ** m )

Definition at line 826 of file kschan.cpp.

◆ add_hhstate()

KSState * KSChan::add_hhstate ( const char * name )

Definition at line 1523 of file kschan.cpp.

◆ add_ksstate()

KSState * KSChan::add_ksstate	(	int	igate,
		const char *	name
	)

Definition at line 1551 of file kschan.cpp.

◆ add_transition()

KSTransition * KSChan::add_transition	(	int	src,
		int	target
	)

Definition at line 1653 of file kschan.cpp.

◆ alloc()

void KSChan::alloc ( Prop * prop )

virtual

Definition at line 2303 of file kschan.cpp.

◆ alloc_schan_node_data()

void KSChan::alloc_schan_node_data ( )

private

Definition at line 2486 of file kschan.cpp.

◆ alpha()

double KSChan::alpha	(	double	v,
		int	,
		int
	)

inline

Definition at line 373 of file kschan.h.

◆ beta()

double KSChan::beta	(	double	v,
		int	,
		int
	)

inline

Definition at line 376 of file kschan.h.

◆ check_struct()

void KSChan::check_struct ( )

private

Definition at line 1681 of file kschan.cpp.

◆ check_table_thread()

void KSChan::check_table_thread ( NrnThread * nt )

Definition at line 3195 of file kschan.cpp.

◆ conductance()

double KSChan::conductance	(	double	gmax,
		Memb_list *	ml,
		std::size_t	instance,
		std::size_t	offset
	)

Definition at line 2763 of file kschan.cpp.

◆ count()

int KSChan::count ( )

virtual

Definition at line 2958 of file kschan.cpp.

◆ cur()

void KSChan::cur	(	NrnThread *	_nt,
		Memb_list *	ml
	)

virtual

Definition at line 2587 of file kschan.cpp.

◆ cv_sc_update()

void KSChan::cv_sc_update	(	NrnThread *	nt,
		Memb_list *	ml
	)

virtual

Definition at line 3028 of file kschan.cpp.

◆ delete_schan_node_data()

void KSChan::delete_schan_node_data ( )

private

Definition at line 2472 of file kschan.cpp.

◆ destroy_pnt()

void KSChan::destroy_pnt ( Point_process * pp )

Definition at line 138 of file kschan.cpp.

◆ err_if_has_instances()

void KSChan::err_if_has_instances ( ) const

private

Error if instances exist.

Definition at line 2239 of file kschan.cpp.

◆ fillmat()

void KSChan::fillmat	(	double	v,
		Datum *	pd
	)

private

Definition at line 2155 of file kschan.cpp.

◆ free1()

void KSChan::free1 ( )

private

Definition at line 1253 of file kschan.cpp.

◆ freesym()

void KSChan::freesym	(	Symbol *	s,
		Symbol *	tmplt = `NULL`
	)

private

Definition at line 2100 of file kschan.cpp.

◆ gate_index()

int KSChan::gate_index ( int state_index )

Definition at line 1044 of file kschan.cpp.

◆ gate_insert()

KSGateComplex * KSChan::gate_insert	(	int	ig,
		int	is,
		int	power
	)

private

Definition at line 1800 of file kschan.cpp.

◆ gate_remove()

void KSChan::gate_remove ( int i )

private

Definition at line 1831 of file kschan.cpp.

◆ init()

void KSChan::init	(	NrnThread *	nt,
		Memb_list *	ml
	)

virtual

Definition at line 2497 of file kschan.cpp.

◆ installsym()

Symbol * KSChan::installsym	(	const char *	name,
		int	type,
		Symbol *	tmplt = `NULL`
	)

private

Definition at line 2084 of file kschan.cpp.

◆ ion_consist()

void KSChan::ion_consist ( )

private

Almost obsolete: No longer allow KSChan structure changes when instances exist.

However only a change to is_single_, ion_sym != NULL, or nligand affects the dparam size and that circumstance raises an error if instances exist prior to a call to ion_consist. So if ion_consist is called, either there are no instances, or there were no changes to the above three indicators and dparam size has not changed. However, even though ion_sym != NULL is the same, that does not mean that the specific ion used has not changed. And similarly for nligand. Thus, unless the must_allow_size_update is extended to include a change in ions used, ion_consist must continue to update the ion usage. But it no longer needs to realloc p->dparam.

Definition at line 2408 of file kschan.cpp.

◆ is_point()

bool KSChan::is_point ( )

inline

Definition at line 363 of file kschan.h.

◆ is_single()

bool KSChan::is_single ( )

inline

Definition at line 366 of file kschan.h.

◆ jacob()

void KSChan::jacob	(	NrnThread *	_nt,
		Memb_list *	ml
	)

virtual

Definition at line 2601 of file kschan.cpp.

◆ ligand_consist()

void KSChan::ligand_consist	(	int	j,
		int	poff,
		Prop *	p,
		Node *	nd
	)

private

Definition at line 2464 of file kschan.cpp.

◆ looksym()

Symbol * KSChan::looksym	(	const char *	name,
		Symbol *	tmplt = `NULL`
	)

private

Definition at line 2066 of file kschan.cpp.

◆ map()

void KSChan::map	(	Prop *	prop,
		int	ieq,
		neuron::container::data_handle< double > *	pv,
		neuron::container::data_handle< double > *	pvdot,
		double *	atol
	)

virtual

Definition at line 2962 of file kschan.cpp.

◆ mat_dt()

void KSChan::mat_dt	(	double	dt,
		Memb_list *	ml,
		std::size_t	instance,
		std::size_t	offset
	)

private

Definition at line 2179 of file kschan.cpp.

◆ matsol()

void KSChan::matsol	(	NrnThread *	nt,
		Memb_list *	ml
	)

virtual

Definition at line 3001 of file kschan.cpp.

◆ mulmat()

void KSChan::mulmat	(	Memb_list *	ml,
		std::size_t	instance,
		std::size_t	offset_s,
		std::size_t	offset_ds
	)

private

Definition at line 2216 of file kschan.cpp.

◆ needion()

Prop * KSChan::needion	(	Symbol *	s,
		Node *	nd,
		Prop *	pm
	)

private

Definition at line 2367 of file kschan.cpp.

◆ newppsym()

Symbol ** KSChan::newppsym ( int n )

private

Definition at line 2094 of file kschan.cpp.

◆ nsingle() [1/2]

int KSChan::nsingle ( Point_process * pp )

Definition at line 426 of file kssingle.cpp.

◆ nsingle() [2/2]

void KSChan::nsingle	(	Point_process *	pp,
		int	n
	)

Definition at line 421 of file kssingle.cpp.

◆ parm_default_fill()

void KSChan::parm_default_fill ( )

Definition at line 809 of file kschan.cpp.

◆ power()

void KSChan::power	(	KSGateComplex *	gc,
		int	p
	)

Definition at line 991 of file kschan.cpp.

◆ register_data_fields()

void KSChan::register_data_fields ( )

private

Definition at line 2249 of file kschan.cpp.

◆ remove_state()

void KSChan::remove_state ( int is )

Definition at line 1589 of file kschan.cpp.

◆ remove_transition()

void KSChan::remove_transition ( int it )

Definition at line 1667 of file kschan.cpp.

◆ set_single()

void KSChan::set_single	(	bool	b,
		bool	update = `true`
	)

Definition at line 998 of file kschan.cpp.

◆ setcond()

void KSChan::setcond ( )

Definition at line 1298 of file kschan.cpp.

◆ setion()

void KSChan::setion ( const char * s )

Definition at line 1155 of file kschan.cpp.

◆ setivrelation()

void KSChan::setivrelation ( int )

◆ setname()

void KSChan::setname ( const char * s )

Definition at line 943 of file kschan.cpp.

◆ setsname()

void KSChan::setsname	(	int	i,
		const char *	s
	)

Definition at line 1247 of file kschan.cpp.

◆ setstructure()

void KSChan::setstructure ( Vect * vec )

Definition at line 1913 of file kschan.cpp.

◆ settype()

void KSChan::settype	(	KSTransition *	t,
		int	type,
		const char *	lig
	)

Definition at line 1348 of file kschan.cpp.

◆ setupmat()

void KSChan::setupmat ( )

private

Definition at line 2120 of file kschan.cpp.

◆ sname_install()

void KSChan::sname_install ( )

private

Definition at line 2007 of file kschan.cpp.

◆ solvemat()

void KSChan::solvemat	(	Memb_list *	ml,
		std::size_t	instance,
		std::size_t	offset
	)

private

Definition at line 2190 of file kschan.cpp.

◆ spec()

void KSChan::spec ( Memb_list * ml )

virtual

Definition at line 2973 of file kschan.cpp.

◆ state() [1/2]

const char * KSChan::state ( int index )

Definition at line 1031 of file kschan.cpp.

◆ state() [2/2]

void KSChan::state	(	NrnThread *	_nt,
		Memb_list *	ml
	)

virtual

Definition at line 2533 of file kschan.cpp.

◆ state_insert()

KSState * KSChan::state_insert	(	int	i,
		const char *	name,
		double	frac
	)

private

Definition at line 1730 of file kschan.cpp.

◆ state_remove()

void KSChan::state_remove ( int i )

private

Definition at line 1770 of file kschan.cpp.

◆ trans_index()

int KSChan::trans_index	(	int	src,
		int	target
	)

Definition at line 1035 of file kschan.cpp.

◆ trans_insert()

KSTransition * KSChan::trans_insert	(	int	i,
		int	src,
		int	target
	)

private

Definition at line 1851 of file kschan.cpp.

◆ trans_remove()

void KSChan::trans_remove ( int i )

private

Definition at line 1887 of file kschan.cpp.

◆ update_prop()

void KSChan::update_prop ( )

private

Definition at line 1053 of file kschan.cpp.

◆ usetable() [1/4]

bool KSChan::usetable ( )

inline

Definition at line 398 of file kschan.h.

◆ usetable() [2/4]

void KSChan::usetable ( bool use )

Definition at line 3162 of file kschan.cpp.

◆ usetable() [3/4]

void KSChan::usetable	(	bool	use,
		int	size,
		double	vmin,
		double	vmax
	)

Definition at line 3134 of file kschan.cpp.

◆ usetable() [4/4]

int KSChan::usetable	(	double *	vmin,
		double *	vmax
	)

Definition at line 3189 of file kschan.cpp.

Member Data Documentation

◆ cond_model_

int KSChan::cond_model_

Definition at line 446 of file kschan.h.

◆ cvode_ieq_

int KSChan::cvode_ieq_

private

Definition at line 468 of file kschan.h.

◆ diag_

double** KSChan::diag_

private

Definition at line 473 of file kschan.h.

◆ dsize_

int KSChan::dsize_

private

Definition at line 474 of file kschan.h.

◆ dtsav_

double KSChan::dtsav_

private

Definition at line 482 of file kschan.h.

◆ dvinv_

double KSChan::dvinv_

private

Definition at line 482 of file kschan.h.

◆ elms_

double** KSChan::elms_

private

Definition at line 472 of file kschan.h.

◆ erev_deflt_

double KSChan::erev_deflt_

Definition at line 444 of file kschan.h.

◆ gate_size_

int KSChan::gate_size_

private

Definition at line 432 of file kschan.h.

◆ gc_

KSGateComplex* KSChan::gc_

Definition at line 459 of file kschan.h.

◆ gmax_deflt_

double KSChan::gmax_deflt_

Definition at line 443 of file kschan.h.

◆ gmaxoffset_

int KSChan::gmaxoffset_

private

Definition at line 477 of file kschan.h.

◆ hh_tab_size_

int KSChan::hh_tab_size_

private

Definition at line 483 of file kschan.h.

◆ iligtrans_

int KSChan::iligtrans_

Definition at line 451 of file kschan.h.

◆ ion_

std::string KSChan::ion_

Definition at line 442 of file kschan.h.

◆ ion_sym_

Symbol* KSChan::ion_sym_

Definition at line 461 of file kschan.h.

◆ is_point_

bool KSChan::is_point_

private

Definition at line 434 of file kschan.h.

◆ is_single_

bool KSChan::is_single_

private

Definition at line 435 of file kschan.h.

◆ iv_relation_

KSIv* KSChan::iv_relation_

Definition at line 447 of file kschan.h.

◆ ivkstrans_

int KSChan::ivkstrans_

Definition at line 450 of file kschan.h.

◆ ligands_

Symbol** KSChan::ligands_

Definition at line 463 of file kschan.h.

◆ mat_

char* KSChan::mat_

private

Definition at line 471 of file kschan.h.

◆ mechsym_

Symbol* KSChan::mechsym_

private

Definition at line 469 of file kschan.h.

◆ mechtype_

int KSChan::mechtype_

private

Definition at line 438 of file kschan.h.

◆ name_

std::string KSChan::name_

Definition at line 441 of file kschan.h.

◆ ngate_

int KSChan::ngate_

Definition at line 448 of file kschan.h.

◆ nhhstate_

int KSChan::nhhstate_

Definition at line 453 of file kschan.h.

◆ nksstate_

int KSChan::nksstate_

Definition at line 454 of file kschan.h.

◆ nligand_

int KSChan::nligand_

Definition at line 462 of file kschan.h.

◆ nstate_

int KSChan::nstate_

Definition at line 455 of file kschan.h.

◆ ntrans_

int KSChan::ntrans_

Definition at line 449 of file kschan.h.

◆ obj_

Object* KSChan::obj_

Definition at line 464 of file kschan.h.

◆ parm_default

std::vector<double> KSChan::parm_default {}

private

Definition at line 486 of file kschan.h.

◆ pointtype_

int KSChan::pointtype_

private

Definition at line 437 of file kschan.h.

◆ ppoff_

int KSChan::ppoff_

private

Definition at line 479 of file kschan.h.

◆ psize_

int KSChan::psize_

private

Definition at line 475 of file kschan.h.

◆ rlsym_

Symbol* KSChan::rlsym_

private

Definition at line 470 of file kschan.h.

◆ single_

KSSingle* KSChan::single_

Definition at line 465 of file kschan.h.

◆ soffset_

int KSChan::soffset_

private

Definition at line 476 of file kschan.h.

◆ state_

KSState* KSChan::state_

Definition at line 458 of file kschan.h.

◆ state_size_

int KSChan::state_size_

private

Definition at line 431 of file kschan.h.

◆ trans_

KSTransition* KSChan::trans_

Definition at line 460 of file kschan.h.

◆ trans_size_

int KSChan::trans_size_

private

Definition at line 433 of file kschan.h.

◆ usetable_

bool KSChan::usetable_

private

Definition at line 484 of file kschan.h.

◆ vmax_

double KSChan::vmax_

private

Definition at line 482 of file kschan.h.

◆ vmin_

double KSChan::vmin_

private

Definition at line 482 of file kschan.h.

The documentation for this class was generated from the following files:

/home/docs/checkouts/readthedocs.org/user_builds/nrn/checkouts/3466/src/nrniv/kschan.h
/home/docs/checkouts/readthedocs.org/user_builds/nrn/checkouts/3466/src/nrniv/kschan.cpp
/home/docs/checkouts/readthedocs.org/user_builds/nrn/checkouts/3466/src/nrniv/kssingle.cpp

Public Member Functions

Public Attributes

Private Member Functions

Private Attributes

Detailed Description

Constructor & Destructor Documentation

◆ KSChan()

◆ ~KSChan()

Member Function Documentation

◆ add_channel()

◆ add_hhstate()

◆ add_ksstate()

◆ add_transition()

◆ alloc()

◆ alloc_schan_node_data()

◆ alpha()

◆ beta()

◆ check_struct()

◆ check_table_thread()

◆ conductance()

◆ count()

◆ cur()

◆ cv_sc_update()

◆ delete_schan_node_data()

◆ destroy_pnt()

◆ err_if_has_instances()

◆ fillmat()

◆ free1()

◆ freesym()

◆ gate_index()

◆ gate_insert()

◆ gate_remove()

◆ init()

◆ installsym()

◆ ion_consist()

◆ is_point()

◆ is_single()

◆ jacob()

◆ ligand_consist()

◆ looksym()

◆ map()

◆ mat_dt()

◆ matsol()

◆ mulmat()

◆ needion()

◆ newppsym()

◆ nsingle() [1/2]

◆ nsingle() [2/2]

◆ parm_default_fill()

◆ power()

◆ register_data_fields()

◆ remove_state()

◆ remove_transition()

◆ set_single()

◆ setcond()

◆ setion()

◆ setivrelation()

◆ setname()

◆ setsname()

◆ setstructure()

◆ settype()

◆ setupmat()

◆ sname_install()

◆ solvemat()

◆ spec()

◆ state() [1/2]

◆ state() [2/2]

◆ state_insert()

◆ state_remove()

◆ trans_index()

◆ trans_insert()

◆ trans_remove()

◆ update_prop()

◆ usetable() [1/4]

◆ usetable() [2/4]

◆ usetable() [3/4]

◆ usetable() [4/4]

Member Data Documentation

◆ cond_model_

◆ cvode_ieq_