#include <../../nrnconf.h>
#include <cstdlib>
#include "cabcode.h"
#include "section.h"
#include "neuron.h"
#include "neuron/cache/mechanism_range.hpp"
#include "membfunc.h"
#include "parse.hpp"
#include "membdef.h"
#include "nrniv_mf.h"
#include "nrnunits.h"
#include <array>
#include <string>
#include <map>
#include <set>

Macros
#define	global_conci(type) ion_global_map[type][0]

#define	global_conco(type) ion_global_map[type][1]

#define	global_charge(type) ion_global_map[type][2]

#define	VAL_SENTINAL -10000.

#define	ktf (1000. * _gasconstant_codata2018 * (celsius + 273.15) / _faraday_codata2018)

#define	charge global_charge(type)

#define	conci0 global_conci(type)

#define	conco0 global_conco(type)

Functions
static void	ion_alloc (Prop *)

static void	ion_cur (neuron::model_sorted_token const &, NrnThread , Memb_list , int)

static void	ion_init (neuron::model_sorted_token const &, NrnThread , Memb_list , int)

int	nrn_is_ion (int type)

double	nrn_ion_charge (Symbol *sym)

void	ion_register (void)

void	ion_charge (void)

void	reg_parm_default (int mechtype, const std::string &name)

void	ion_reg (const char *name, double valence)

void	nrn_verify_ion_charge_defined ()

double	nrn_nernst (double ci, double co, double z)

void	nrn_wrote_conc (Symbol *sym, double &erev, double ci, double co, int it)

void	nernst (void)

static double	efun (double x)

double	nrn_ghk (double v, double ci, double co, double z)

void	ghk (void)

double	nrn_nernst_coef (int type)

static void	add_mechtype2ionconctype (int mechtype, int iontype, int i)

static bool	mech_uses_ionconctype (int mechtype, int iontype, int i)

void	nrn_check_conc_write (Prop pmech, Prop pion, int i)

void	ion_style (void)

int	nrn_vartype (const Symbol *sym)

void	nrn_promote (Prop *p, int conc, int rev)

void	second_order_cur (NrnThread *nt)

Variables
static constexpr auto	nparm = 5

static constexpr auto	ndparam = 1

static const char *	mechanism []

static DoubScal	scdoub []

static int	na_ion

static int	k_ion

static int	ca_ion

static int	ion_global_map_size

static double **	ion_global_map

static std::vector< double >	naparmdflt {DEF_ena, DEF_nai, DEF_nao}

static std::vector< double >	kparmdflt {DEF_ek, DEF_ki, DEF_ko}

static std::vector< double >	caparmdflt {DEF_eca, DEF_cai, DEF_cao}

static std::vector< double >	ionparmdflt {DEF_eion, DEF_ioni, DEF_iono}

static constexpr auto	iontype_index_dparam = 0

static constexpr auto	erev_index = 0

static constexpr auto	conci_index = 1

static constexpr auto	conco_index = 2

static constexpr auto	cur_index = 3

static constexpr auto	dcurdv_index = 4

static std::map< int, std::set< int > >	mechtype2ionconctype

Macro Definition Documentation

◆ charge

#define charge global_charge(type)

Definition at line 384 of file eion.cpp.

◆ conci0

#define conci0 global_conci(type)

Definition at line 385 of file eion.cpp.

◆ conco0

#define conco0 global_conco(type)

Definition at line 386 of file eion.cpp.

◆ global_charge

#define global_charge ( type ) ion_global_map[type][2]

Definition at line 58 of file eion.cpp.

◆ global_conci

#define global_conci ( type ) ion_global_map[type][0]

Definition at line 56 of file eion.cpp.

◆ global_conco

#define global_conco ( type ) ion_global_map[type][1]

Definition at line 57 of file eion.cpp.

◆ ktf

#define ktf (1000. * _gasconstant_codata2018 * (celsius + 273.15) / _faraday_codata2018)

Definition at line 278 of file eion.cpp.

◆ VAL_SENTINAL

#define VAL_SENTINAL -10000.

Function Documentation

◆ add_mechtype2ionconctype()

static void add_mechtype2ionconctype	(	int	mechtype,
		int	iontype,
		int	i
	)

static

Definition at line 409 of file eion.cpp.

◆ efun()

static double efun ( double x )

static

Definition at line 341 of file eion.cpp.

◆ ghk()

void ghk ( void )

Definition at line 357 of file eion.cpp.

◆ ion_alloc()

static void ion_alloc ( Prop * p )

static

Definition at line 614 of file eion.cpp.

◆ ion_charge()

void ion_charge ( void )

Definition at line 140 of file eion.cpp.

◆ ion_cur()

static void ion_cur	(	neuron::model_sorted_token const &	sorted_token,
		NrnThread *	nt,
		Memb_list *	ml,
		int	type
	)

static

Definition at line 567 of file eion.cpp.

◆ ion_init()

static void ion_init	(	neuron::model_sorted_token const &	sorted_token,
		NrnThread *	nt,
		Memb_list *	ml,
		int	type
	)

static

Definition at line 589 of file eion.cpp.

◆ ion_reg()

void ion_reg	(	const char *	name,
		double	valence
	)

Definition at line 162 of file eion.cpp.

◆ ion_register()

void ion_register ( void )

Definition at line 64 of file eion.cpp.

◆ ion_style()

void ion_style ( void )

Definition at line 466 of file eion.cpp.

◆ mech_uses_ionconctype()

static bool mech_uses_ionconctype	(	int	mechtype,
		int	iontype,
		int	i
	)

static

Definition at line 414 of file eion.cpp.

◆ nernst()

void nernst ( void )

Definition at line 299 of file eion.cpp.

◆ nrn_check_conc_write()

void nrn_check_conc_write	(	Prop *	pmech,
		Prop *	pion,
		int	i
	)

Definition at line 422 of file eion.cpp.

◆ nrn_ghk()

double nrn_ghk	(	double	v,
		double	ci,
		double	co,
		double	z
	)

Definition at line 349 of file eion.cpp.

◆ nrn_ion_charge()

double nrn_ion_charge ( Symbol * sym )

Definition at line 60 of file eion.cpp.

◆ nrn_is_ion()

int nrn_is_ion ( int type )

Definition at line 50 of file eion.cpp.

◆ nrn_nernst()

double nrn_nernst	(	double	ci,
		double	co,
		double	z
	)

Definition at line 279 of file eion.cpp.

◆ nrn_nernst_coef()

double nrn_nernst_coef ( int type )

Definition at line 388 of file eion.cpp.

◆ nrn_promote()

void nrn_promote	(	Prop *	p,
		int	conc,
		int	rev
	)

Definition at line 527 of file eion.cpp.

◆ nrn_vartype()

int nrn_vartype ( const Symbol * sym )

Definition at line 503 of file eion.cpp.

◆ nrn_verify_ion_charge_defined()

void nrn_verify_ion_charge_defined ( )

Definition at line 263 of file eion.cpp.

◆ nrn_wrote_conc()

void nrn_wrote_conc	(	Symbol *	sym,
		double &	erev,
		double	ci,
		double	co,
		int	it
	)

Definition at line 293 of file eion.cpp.

◆ reg_parm_default()

void reg_parm_default	(	int	mechtype,
		const std::string &	name
	)

Definition at line 154 of file eion.cpp.

◆ second_order_cur()

void second_order_cur ( NrnThread * nt )

Definition at line 640 of file eion.cpp.

Variable Documentation

◆ ca_ion

int ca_ion

static

Definition at line 48 of file eion.cpp.

◆ caparmdflt

std::vector<double> caparmdflt {DEF_eca, DEF_cai, DEF_cao}

static

Definition at line 151 of file eion.cpp.

◆ conci_index

constexpr auto conci_index = 1

staticconstexpr

Definition at line 364 of file eion.cpp.

◆ conco_index

constexpr auto conco_index = 2

staticconstexpr

Definition at line 365 of file eion.cpp.

◆ cur_index

constexpr auto cur_index = 3

staticconstexpr

Definition at line 366 of file eion.cpp.

◆ dcurdv_index

constexpr auto dcurdv_index = 4

staticconstexpr

Definition at line 367 of file eion.cpp.

◆ erev_index

constexpr auto erev_index = 0

staticconstexpr

Definition at line 363 of file eion.cpp.

◆ ion_global_map

double** ion_global_map

static

Definition at line 55 of file eion.cpp.

◆ ion_global_map_size

int ion_global_map_size

static

Definition at line 54 of file eion.cpp.

◆ ionparmdflt

std::vector<double> ionparmdflt {DEF_eion, DEF_ioni, DEF_iono}

static

Definition at line 152 of file eion.cpp.

◆ iontype_index_dparam

constexpr auto iontype_index_dparam = 0

staticconstexpr

Definition at line 362 of file eion.cpp.

◆ k_ion

int k_ion

static

Definition at line 48 of file eion.cpp.

◆ kparmdflt

std::vector<double> kparmdflt {DEF_ek, DEF_ki, DEF_ko}

static

Definition at line 150 of file eion.cpp.

◆ mechanism

const char* mechanism[]

static

Initial value:

= {
                                  "0",
                                  "na_ion",
                                  "ena",
                                  "nao",
                                  "nai",
                                  0,
                                  "ina",
                                  "dina_dv_",
                                  0,
                                  0}

Definition at line 26 of file eion.cpp.

◆ mechtype2ionconctype

std::map<int, std::set<int> > mechtype2ionconctype

static

Definition at line 407 of file eion.cpp.

◆ na_ion

int na_ion

static

Definition at line 48 of file eion.cpp.

◆ naparmdflt

std::vector<double> naparmdflt {DEF_ena, DEF_nai, DEF_nao}

static

Definition at line 149 of file eion.cpp.

◆ ndparam

constexpr auto ndparam = 1

staticconstexpr

Definition at line 25 of file eion.cpp.

◆ nparm

constexpr auto nparm = 5

staticconstexpr

Definition at line 24 of file eion.cpp.

◆ scdoub

DoubScal scdoub[]

static

Initial value:

= {
                            {"ci0_na_ion", 0},
                            {"co0_na_ion", 0},
                            {0, 0}}

Definition at line 37 of file eion.cpp.

Macros

Functions

Variables

Macro Definition Documentation

◆ charge

◆ conci0

◆ conco0

◆ global_charge

◆ global_conci

◆ global_conco

◆ ktf

◆ VAL_SENTINAL

Function Documentation

◆ add_mechtype2ionconctype()

◆ efun()

◆ ghk()

◆ ion_alloc()

◆ ion_charge()

◆ ion_cur()

◆ ion_init()

◆ ion_reg()

◆ ion_register()

◆ ion_style()

◆ mech_uses_ionconctype()

◆ nernst()

◆ nrn_check_conc_write()

◆ nrn_ghk()

◆ nrn_ion_charge()

◆ nrn_is_ion()

◆ nrn_nernst()

◆ nrn_nernst_coef()

◆ nrn_promote()

◆ nrn_vartype()

◆ nrn_verify_ion_charge_defined()

◆ nrn_wrote_conc()

◆ reg_parm_default()

◆ second_order_cur()

Variable Documentation

◆ ca_ion

◆ caparmdflt

◆ conci_index

◆ conco_index

◆ cur_index

◆ dcurdv_index

◆ erev_index

◆ ion_global_map

◆ ion_global_map_size

◆ ionparmdflt

◆ iontype_index_dparam

◆ k_ion

◆ kparmdflt

◆ mechanism

◆ mechtype2ionconctype

◆ na_ion

◆ naparmdflt

◆ ndparam

◆ nparm

◆ scdoub