extcelln.cpp File Reference

#include <../../nrnconf.h>
#include <stdio.h>
#include <math.h>
#include "section.h"
#include "nrniv_mf.h"
#include "hocassrt.h"
#include "parse.hpp"

Go to the source code of this file.

Functions
static void	extcell_alloc (Prop *)
static void	extcell_init (neuron::model_sorted_token const &, NrnThread *nt, Memb_list *ml, int type)
static int	_ode_count (int type)
static void	update_parmsize ()
void	extracell_reg_ (void)
void	nrn_update_2d (NrnThread *nt)
void	extnode_free_elements (Extnode *nde)
static void	check_if_extracellular_in_use ()
static void	update_existing_extnode (int old_nlayer)
static void	update_extracellular_reg (int old_nlayer)
void	nlayer_extracellular ()
static void	extnode_alloc_elements (Extnode *nde)
void	extcell_node_create (Node *nd)
void	extcell_2d_alloc (Section *sec)
void	nrn_rhs_ext (NrnThread *_nt)
void	nrn_setup_ext (NrnThread *_nt)
void	ext_con_coef (void)

Variables
int	nrn_use_daspk_
int	nrn_nlayer_extracellular = EXTRACELLULAR
static const char *	mechanism []
static HocParmLimits	limits []
static HocParmUnits	units []
constexpr static auto	nparm
static std::vector< double >	param_default

Function Documentation

_ode_count()

static int _ode_count ( int  type )

static

Definition at line 55 of file extcelln.cpp.

check_if_extracellular_in_use()

static void check_if_extracellular_in_use ( )

static

Definition at line 227 of file extcelln.cpp.

ext_con_coef()

void ext_con_coef

(

void

)

Definition at line 483 of file extcelln.cpp.

extcell_2d_alloc()

void extcell_2d_alloc

(

Section *

sec

)

Definition at line 328 of file extcelln.cpp.

extcell_alloc()

static void extcell_alloc ( Prop *  p )

static

Definition at line 180 of file extcelln.cpp.

extcell_init()

static void extcell_init ( neuron::model_sorted_token const &  , NrnThread *  nt, Memb_list *  ml, int  type  )

static

Definition at line 192 of file extcelln.cpp.

extcell_node_create()

void extcell_node_create

(

Node *

nd

)

Definition at line 302 of file extcelln.cpp.

extnode_alloc_elements()

static void extnode_alloc_elements ( Extnode *  nde )

static

Definition at line 286 of file extcelln.cpp.

extnode_free_elements()

void extnode_free_elements

(

Extnode *

nde

)

Definition at line 211 of file extcelln.cpp.

extracell_reg_()

void extracell_reg_

(

void

)

Definition at line 100 of file extcelln.cpp.

nlayer_extracellular()

void nlayer_extracellular

(

)

Definition at line 269 of file extcelln.cpp.

nrn_rhs_ext()

void nrn_rhs_ext

(

NrnThread *

_nt

)

Definition at line 340 of file extcelln.cpp.

nrn_setup_ext()

void nrn_setup_ext

(

NrnThread *

_nt

)

Definition at line 417 of file extcelln.cpp.

nrn_update_2d()

void nrn_update_2d

(

NrnThread *

nt

)

Definition at line 122 of file extcelln.cpp.

update_existing_extnode()

static void update_existing_extnode ( int  old_nlayer )

static

Definition at line 235 of file extcelln.cpp.

update_extracellular_reg()

static void update_extracellular_reg ( int  old_nlayer )

static

Definition at line 246 of file extcelln.cpp.

update_parmsize()

static void update_parmsize ( )

static

Definition at line 74 of file extcelln.cpp.

Variable Documentation

limits

HocParmLimits limits[]

static

Initial value:

= {{"xraxial", {1e-9, 1e15}},
                                 {"xg", {0., 1e15}},
                                 {"xc", {0., 1e15}},
                                 {nullptr, {0., 0.}}}

Definition at line 36 of file extcelln.cpp.

mechanism

const char* mechanism[]

static

Initial value:

= {"0",
                                  "extracellular",
                                  "xraxial[N]",
                                  "xg[N]",
                                  "xc[N]",
                                  "e_extracellular",
                                  nullptr,
 
                                  "i_membrane",
                                  "sav_g",
                                  "sav_rhs",
 
                                  nullptr,
                                  "vext[N]",  
                                  nullptr}

Definition at line 21 of file extcelln.cpp.

nparm

constexpr static auto nparm

staticconstexpr

Initial value:

= 4
 
                              + 3

Definition at line 66 of file extcelln.cpp.

nrn_nlayer_extracellular

int nrn_nlayer_extracellular = EXTRACELLULAR

Definition at line 16 of file extcelln.cpp.

nrn_use_daspk_

int nrn_use_daspk_

extern

Definition at line 59 of file treeset.cpp.

param_default

std::vector<double> param_default

static

Initial value:

{
    1e9, 
    1e9, 
    0.0, 
    0.0, 
}

Definition at line 93 of file extcelln.cpp.

units

HocParmUnits units[]

static

Initial value:

= {{"xraxial", "MOhm/cm"},
                               {"xg", "S/cm2"},
                               {"xc", "uF/cm2"},
                               {"e_extracellular", "mV"},
                               {"vext", "mV"},
                               {"i_membrane", "mA/cm2"},
                               {0, 0}}

Definition at line 41 of file extcelln.cpp.