#include <../../nrnconf.h>
#include "nrnmpi.h"
#include <cmath>
#include <cstdlib>
#include "classreg.h"
#include "code.h"
#include "nrnoc2iv.h"
#include "datapath.h"
#include "cvodeobj.h"
#include "netcvode.h"
#include "membfunc.h"
#include "nrn_ansi.h"
#include "nrncvode.h"
#include "nrndaspk.h"
#include "nrniv_mf.h"
#include "nrnpy.h"
#include "tqueue.hpp"
#include "mymath.h"
#include <nrnmutdec.h>
#include "cvodes/cvodes.h"
#include "cvodes/cvodes_impl.h"
#include "cvodes/cvdense.h"
#include "cvodes/cvdiag.h"
#include "shared/dense.h"
#include "ida/ida.h"
#include "nonvintblock.h"

Macros
#define	nt_dt nrn_threads->_dt

#define	nt_t nrn_threads->_t

#define	SUCCESS CV_SUCCESS

Typedefs
using	ExtraScatterList = std::vector< Object * >

Functions
void	cvode_finitialize ()

static void	static_mutex_for_at_time (bool b)

int	linmod_extra_eqn_count ()

int	nrn_modeltype ()

static double	solve (void *v)

static double	statistics (void *v)

static double	spikestat (void *v)

static double	queue_mode (void *v)

void	nrn_extra_scatter_gather (int direction, int tid)

static double	re_init (void *v)

static double	rtol (void *v)

static double	nrn_atol (void *v)

Symbol *	hoc_get_last_pointer_symbol ()

void	hoc_symbol_tolerance (Symbol *, double)

static double	abstol (void *v)

static double	active (void *v)

static double	stiff (void *v)

static double	maxorder (void *v)

static double	order (void *v)

static double	minstep (void *v)

static double	maxstep (void *v)

static double	jacobian (void *v)

static double	states (void *v)

static double	dstates (void *v)

double	nrn_hoc2fun (void *v)

double	nrn_hoc2scatter_y (void *v)

double	nrn_hoc2gather_y (void *v)

double	nrn_hoc2fixed_step (void *v)

static double	error_weights (void *v)

static double	acor (void *v)

static double	statename (void *v)

static double	use_local_dt (void *v)

static double	use_daspk (void *v)

static double	dae_init_dteps (void *v)

static double	use_mxb (void *v)

static double	cache_efficient (void *v)

static double	use_long_double (void *v)

static double	condition_order (void *v)

static double	debug_event (void *v)

static double	n_record (void *v)

static double	n_remove (void *v)

static double	simgraph_remove (void *v)

static double	state_magnitudes (void *v)

static double	tstop_event (void *v)

static double	current_method (void *v)

static double	peq (void *v)

static double	event_queue_info (void *v)

static double	store_events (void *v)

static Object **	netconlist (void *v)

static double	ncs_netcons (void *v)

static double	use_parallel (void *v)

static double	nrn_structure_change_count (void *v)

static double	nrn_diam_change_count (void *v)

static double	extra_scatter_gather (void *v)

static double	extra_scatter_gather_remove (void *v)

static double	use_fast_imem (void *v)

static double	poolshrink (void *)

static double	free_event_queues (void *)

static void *	cons (Object *)

static void	destruct (void *v)

void	Cvode_reg ()

static int	minit (CVodeMem cv_mem)

static int	msetup (CVodeMem cv_mem, int convfail, N_Vector ypred, N_Vector fpred, booleantype *jcurPtr, N_Vector vtemp, N_Vector vtemp2, N_Vector vtemp3)

static int	msolve (CVodeMem cv_mem, N_Vector b, N_Vector weight, N_Vector ycur, N_Vector fcur)

static int	msolve_lvardt (CVodeMem cv_mem, N_Vector b, N_Vector weight, N_Vector ycur, N_Vector fcur)

static void	mfree (CVodeMem cv_mem)

static void	f_gvardt (realtype t, N_Vector y, N_Vector ydot, void *f_data)

static void	f_lvardt (realtype t, N_Vector y, N_Vector ydot, void *f_data)

static void	msolve_thread (neuron::model_sorted_token const &, NrnThread &)

static void *	msolve_thread_part1 (NrnThread *)

static void *	msolve_thread_part2 (NrnThread *)

static void *	msolve_thread_part3 (NrnThread *)

static void	f_thread (neuron::model_sorted_token const &, NrnThread &)

static void	f_thread_transfer_part1 (neuron::model_sorted_token const &, NrnThread &)

static void	f_thread_transfer_part2 (neuron::model_sorted_token const &, NrnThread &)

static void *	f_thread_ms_part1 (NrnThread *)

static void *	f_thread_ms_part2 (NrnThread *)

static void *	f_thread_ms_part3 (NrnThread *)

static void *	f_thread_ms_part4 (NrnThread *)

static void *	f_thread_ms_part34 (NrnThread *)

static void *	maxstate_thread (NrnThread *nt)

static Section *	cv_rootsec (const Cvode *cv)

Variables
void(*	nrn_multisplit_setup_ )()

double	dt

double	t

int	secondorder

int	nrn_use_selfqueue_

void(*	nrnthread_v_transfer_ )(NrnThread *)

void(*	nrnmpi_v_transfer_ )()

NetCvode *	net_cvode_instance

short *	nrn_is_artificial_

bool	nrn_use_fifo_queue_

bool	nrn_use_bin_queue_

static ExtraScatterList *	extra_scatterlist [2]

static Member_func	members []

static Member_ret_obj_func	omembers [] = {{"netconlist", netconlist}, {nullptr, nullptr}}

static CVRhsFn	pf_

static bool	maxstate_b

static Cvode *	maxstate_cv

static N_Vector	msolve_b_

static N_Vector	msolve_ycur_

static Cvode *	msolve_cv_

static realtype	f_t_

static N_Vector	f_y_

static N_Vector	f_ydot_

static Cvode *	f_cv_

Macro Definition Documentation

◆ nt_dt

#define nt_dt nrn_threads->_dt

Definition at line 58 of file cvodeobj.cpp.

◆ nt_t

#define nt_t nrn_threads->_t

Definition at line 59 of file cvodeobj.cpp.

◆ SUCCESS

#define SUCCESS CV_SUCCESS

Definition at line 83 of file cvodeobj.cpp.

Typedef Documentation

◆ ExtraScatterList

using ExtraScatterList = std::vector<Object*>

Definition at line 503 of file cvodeobj.cpp.

Function Documentation

◆ abstol()

static double abstol ( void * v )

static

Definition at line 165 of file cvodeobj.cpp.

◆ acor()

static double acor ( void * v )

static

Definition at line 277 of file cvodeobj.cpp.

◆ active()

static double active ( void * v )

static

Definition at line 192 of file cvodeobj.cpp.

◆ cache_efficient()

static double cache_efficient ( void * v )

static

Definition at line 338 of file cvodeobj.cpp.

◆ condition_order()

static double condition_order ( void * v )

static

Definition at line 356 of file cvodeobj.cpp.

◆ cons()

static void* cons ( Object * )

static

Definition at line 631 of file cvodeobj.cpp.

◆ current_method()

static double current_method ( void * v )

static

Definition at line 432 of file cvodeobj.cpp.

◆ cv_rootsec()

static Section* cv_rootsec ( const Cvode * cv )

static

Definition at line 1052 of file cvodeobj.cpp.

◆ cvode_finitialize()

void cvode_finitialize ( )

◆ Cvode_reg()

void Cvode_reg ( )

Definition at line 653 of file cvodeobj.cpp.

◆ dae_init_dteps()

static double dae_init_dteps ( void * v )

static

Definition at line 316 of file cvodeobj.cpp.

◆ debug_event()

static double debug_event ( void * v )

static

Definition at line 366 of file cvodeobj.cpp.

◆ destruct()

static void destruct ( void * v )

static

Definition at line 646 of file cvodeobj.cpp.

◆ dstates()

static double dstates ( void * v )

static

Definition at line 260 of file cvodeobj.cpp.

◆ error_weights()

static double error_weights ( void * v )

static

Definition at line 271 of file cvodeobj.cpp.

◆ event_queue_info()

static double event_queue_info ( void * v )

static

Definition at line 454 of file cvodeobj.cpp.

◆ extra_scatter_gather()

static double extra_scatter_gather ( void * v )

static

Definition at line 518 of file cvodeobj.cpp.

◆ extra_scatter_gather_remove()

static double extra_scatter_gather_remove ( void * v )

static

Definition at line 532 of file cvodeobj.cpp.

◆ f_gvardt()

static void f_gvardt	(	realtype	t,
		N_Vector	y,
		N_Vector	ydot,
		void *	f_data
	)

static

Definition at line 1575 of file cvodeobj.cpp.

◆ f_lvardt()

static void f_lvardt	(	realtype	t,
		N_Vector	y,
		N_Vector	ydot,
		void *	f_data
	)

static

Definition at line 1612 of file cvodeobj.cpp.

◆ f_thread()

static void f_thread	(	neuron::model_sorted_token const &	sorted_token,
		NrnThread &	ntr
	)

static

Definition at line 1623 of file cvodeobj.cpp.

◆ f_thread_ms_part1()

static void * f_thread_ms_part1 ( NrnThread * nt )

static

Definition at line 1648 of file cvodeobj.cpp.

◆ f_thread_ms_part2()

static void * f_thread_ms_part2 ( NrnThread * nt )

static

Definition at line 1655 of file cvodeobj.cpp.

◆ f_thread_ms_part3()

static void * f_thread_ms_part3 ( NrnThread * nt )

static

Definition at line 1660 of file cvodeobj.cpp.

◆ f_thread_ms_part34()

static void * f_thread_ms_part34 ( NrnThread * nt )

static

Definition at line 1671 of file cvodeobj.cpp.

◆ f_thread_ms_part4()

static void * f_thread_ms_part4 ( NrnThread * nt )

static

Definition at line 1665 of file cvodeobj.cpp.

◆ f_thread_transfer_part1()

static void f_thread_transfer_part1	(	neuron::model_sorted_token const &	sorted_token,
		NrnThread &	ntr
	)

static

Definition at line 1632 of file cvodeobj.cpp.

◆ f_thread_transfer_part2()

static void f_thread_transfer_part2	(	neuron::model_sorted_token const &	sorted_token,
		NrnThread &	ntr
	)

static

Definition at line 1640 of file cvodeobj.cpp.

◆ free_event_queues()

static double free_event_queues ( void * )

static

Definition at line 572 of file cvodeobj.cpp.

◆ hoc_get_last_pointer_symbol()

Symbol* hoc_get_last_pointer_symbol ( )

Definition at line 1789 of file code.cpp.

◆ hoc_symbol_tolerance()

void hoc_symbol_tolerance	(	Symbol *	sym,
		double	tol
	)

Definition at line 111 of file code2.cpp.

◆ jacobian()

static double jacobian ( void * v )

static

Definition at line 245 of file cvodeobj.cpp.

◆ linmod_extra_eqn_count()

int linmod_extra_eqn_count ( )

◆ maxorder()

static double maxorder ( void * v )

static

Definition at line 210 of file cvodeobj.cpp.

◆ maxstate_thread()

static void* maxstate_thread ( NrnThread * nt )

static

Definition at line 916 of file cvodeobj.cpp.

◆ maxstep()

static double maxstep ( void * v )

static

Definition at line 237 of file cvodeobj.cpp.

◆ mfree()

static void mfree ( CVodeMem cv_mem )

static

Definition at line 1567 of file cvodeobj.cpp.

◆ minit()

static int minit ( CVodeMem cv_mem )

static

Definition at line 1469 of file cvodeobj.cpp.

◆ minstep()

static double minstep ( void * v )

static

Definition at line 229 of file cvodeobj.cpp.

◆ msetup()

static int msetup	(	CVodeMem	cv_mem,
		int	convfail,
		N_Vector	ypred,
		N_Vector	fpred,
		booleantype *	jcurPtr,
		N_Vector	vtemp,
		N_Vector	vtemp2,
		N_Vector	vtemp3
	)

static

Definition at line 1474 of file cvodeobj.cpp.

◆ msolve()

static int msolve	(	CVodeMem	cv_mem,
		N_Vector	b,
		N_Vector	weight,
		N_Vector	ycur,
		N_Vector	fcur
	)

static

Definition at line 1492 of file cvodeobj.cpp.

◆ msolve_lvardt()

static int msolve_lvardt	(	CVodeMem	cv_mem,
		N_Vector	b,
		N_Vector	weight,
		N_Vector	ycur,
		N_Vector	fcur
	)

static

Definition at line 1520 of file cvodeobj.cpp.

◆ msolve_thread()

static void msolve_thread	(	neuron::model_sorted_token const &	sorted_token,
		NrnThread &	nt
	)

static

Definition at line 1537 of file cvodeobj.cpp.

◆ msolve_thread_part1()

static void * msolve_thread_part1 ( NrnThread * nt )

static

Definition at line 1547 of file cvodeobj.cpp.

◆ msolve_thread_part2()

static void * msolve_thread_part2 ( NrnThread * nt )

static

Definition at line 1554 of file cvodeobj.cpp.

◆ msolve_thread_part3()

static void * msolve_thread_part3 ( NrnThread * nt )

static

Definition at line 1559 of file cvodeobj.cpp.

◆ n_record()

static double n_record ( void * v )

static

Definition at line 376 of file cvodeobj.cpp.

◆ n_remove()

static double n_remove ( void * v )

static

Definition at line 382 of file cvodeobj.cpp.

◆ ncs_netcons()

static double ncs_netcons ( void * v )

static

Definition at line 471 of file cvodeobj.cpp.

◆ netconlist()

static Object** netconlist ( void * v )

static

Definition at line 466 of file cvodeobj.cpp.

◆ nrn_atol()

static double nrn_atol ( void * v )

static

Definition at line 154 of file cvodeobj.cpp.

◆ nrn_diam_change_count()

static double nrn_diam_change_count ( void * v )

static

Definition at line 498 of file cvodeobj.cpp.

◆ nrn_extra_scatter_gather()

void nrn_extra_scatter_gather	(	int	direction,
		int	tid
	)

Definition at line 506 of file cvodeobj.cpp.

◆ nrn_hoc2fixed_step()

double nrn_hoc2fixed_step ( void * v )

Definition at line 4229 of file netcvode.cpp.

◆ nrn_hoc2fun()

double nrn_hoc2fun ( void * v )

Definition at line 4234 of file netcvode.cpp.

◆ nrn_hoc2gather_y()

double nrn_hoc2gather_y ( void * v )

Definition at line 4269 of file netcvode.cpp.

◆ nrn_hoc2scatter_y()

double nrn_hoc2scatter_y ( void * v )

Definition at line 4253 of file netcvode.cpp.

◆ nrn_modeltype()

int nrn_modeltype ( )

Definition at line 1785 of file treeset.cpp.

◆ nrn_structure_change_count()

static double nrn_structure_change_count ( void * v )

static

Definition at line 493 of file cvodeobj.cpp.

◆ order()

static double order ( void * v )

static

Definition at line 218 of file cvodeobj.cpp.

◆ peq()

static double peq ( void * v )

static

Definition at line 448 of file cvodeobj.cpp.

◆ poolshrink()

static double poolshrink ( void * )

static

Definition at line 562 of file cvodeobj.cpp.

◆ queue_mode()

static double queue_mode ( void * v )

static

Definition at line 117 of file cvodeobj.cpp.

◆ re_init()

static double re_init ( void * v )

static

Definition at line 138 of file cvodeobj.cpp.

◆ rtol()

static double rtol ( void * v )

static

Definition at line 147 of file cvodeobj.cpp.

◆ simgraph_remove()

static double simgraph_remove ( void * v )

static

Definition at line 388 of file cvodeobj.cpp.

◆ solve()

static double solve ( void * v )

static

Definition at line 87 of file cvodeobj.cpp.

◆ spikestat()

static double spikestat ( void * v )

static

Definition at line 112 of file cvodeobj.cpp.

◆ state_magnitudes()

static double state_magnitudes ( void * v )

static

Definition at line 394 of file cvodeobj.cpp.

◆ statename()

static double statename ( void * v )

static

Definition at line 283 of file cvodeobj.cpp.

◆ states()

static double states ( void * v )

static

Definition at line 254 of file cvodeobj.cpp.

◆ static_mutex_for_at_time()

static void static_mutex_for_at_time ( bool b )

static

Definition at line 34 of file cvodeobj.cpp.

◆ statistics()

static double statistics ( void * v )

static

Definition at line 103 of file cvodeobj.cpp.

◆ stiff()

static double stiff ( void * v )

static

Definition at line 202 of file cvodeobj.cpp.

◆ store_events()

static double store_events ( void * v )

static

Definition at line 460 of file cvodeobj.cpp.

◆ tstop_event()

static double tstop_event ( void * v )

static

Definition at line 399 of file cvodeobj.cpp.

◆ use_daspk()

static double use_daspk ( void * v )

static

Definition at line 304 of file cvodeobj.cpp.

◆ use_fast_imem()

static double use_fast_imem ( void * v )

static

Definition at line 552 of file cvodeobj.cpp.

◆ use_local_dt()

static double use_local_dt ( void * v )

static

Definition at line 294 of file cvodeobj.cpp.

◆ use_long_double()

static double use_long_double ( void * v )

static

Definition at line 345 of file cvodeobj.cpp.

◆ use_mxb()

static double use_mxb ( void * v )

static

Definition at line 326 of file cvodeobj.cpp.

◆ use_parallel()

static double use_parallel ( void * v )

static

Definition at line 480 of file cvodeobj.cpp.

Variable Documentation

◆ dt

double dt

extern

Definition at line 70 of file netcvode.cpp.

◆ extra_scatterlist

ExtraScatterList* extra_scatterlist[2]

static

Definition at line 504 of file cvodeobj.cpp.

◆ f_cv_

Cvode* f_cv_

static

Definition at line 1574 of file cvodeobj.cpp.

◆ f_t_

realtype f_t_

static

Definition at line 1571 of file cvodeobj.cpp.

◆ f_y_

N_Vector f_y_

static

Definition at line 1572 of file cvodeobj.cpp.

◆ f_ydot_

N_Vector f_ydot_

static

Definition at line 1573 of file cvodeobj.cpp.

◆ maxstate_b

bool maxstate_b

static

Definition at line 914 of file cvodeobj.cpp.

◆ maxstate_cv

Cvode* maxstate_cv

static

Definition at line 915 of file cvodeobj.cpp.

◆ members

Member_func members[]

static

Definition at line 577 of file cvodeobj.cpp.

◆ msolve_b_

N_Vector msolve_b_

static

Definition at line 1489 of file cvodeobj.cpp.

◆ msolve_cv_

Cvode* msolve_cv_

static

Definition at line 1491 of file cvodeobj.cpp.

◆ msolve_ycur_

N_Vector msolve_ycur_

static

Definition at line 1490 of file cvodeobj.cpp.

◆ net_cvode_instance

NetCvode* net_cvode_instance

extern

Definition at line 26 of file cvodestb.cpp.

◆ nrn_is_artificial_

short * nrn_is_artificial_

extern

Definition at line 19 of file cell_group.cpp.

◆ nrn_multisplit_setup_

void(* nrn_multisplit_setup_) () ( )

extern

Definition at line 50 of file treeset.cpp.

◆ nrn_use_bin_queue_

bool nrn_use_bin_queue_

extern

Definition at line 225 of file netcvode.cpp.

◆ nrn_use_fifo_queue_

bool nrn_use_fifo_queue_

extern

Definition at line 223 of file netcvode.cpp.

◆ nrn_use_selfqueue_

int nrn_use_selfqueue_

extern

Definition at line 77 of file netcvode.cpp.

◆ nrnmpi_v_transfer_

void(* nrnmpi_v_transfer_) () ( )

extern

Definition at line 138 of file fadvance.cpp.

◆ nrnthread_v_transfer_

void(* nrnthread_v_transfer_) (NrnThread *) ( NrnThread * nt )

extern

Definition at line 139 of file fadvance.cpp.

◆ omembers

Member_ret_obj_func omembers[] = {{"netconlist", netconlist}, {nullptr, nullptr}}

static

Definition at line 629 of file cvodeobj.cpp.

◆ pf_

CVRhsFn pf_

static

Definition at line 679 of file cvodeobj.cpp.

◆ secondorder

int secondorder

extern

Definition at line 107 of file init.cpp.

◆ t

double t

Definition at line 57 of file cvodeobj.cpp.

Macros

Typedefs

Functions

Variables

Macro Definition Documentation

◆ nt_dt

◆ nt_t

◆ SUCCESS

Typedef Documentation

◆ ExtraScatterList

Function Documentation

◆ abstol()

◆ acor()

◆ active()

◆ cache_efficient()

◆ condition_order()

◆ cons()

◆ current_method()

◆ cv_rootsec()

◆ cvode_finitialize()

◆ Cvode_reg()

◆ dae_init_dteps()

◆ debug_event()

◆ destruct()

◆ dstates()

◆ error_weights()

◆ event_queue_info()

◆ extra_scatter_gather()

◆ extra_scatter_gather_remove()

◆ f_gvardt()

◆ f_lvardt()

◆ f_thread()

◆ f_thread_ms_part1()

◆ f_thread_ms_part2()

◆ f_thread_ms_part3()

◆ f_thread_ms_part34()

◆ f_thread_ms_part4()

◆ f_thread_transfer_part1()

◆ f_thread_transfer_part2()

◆ free_event_queues()

◆ hoc_get_last_pointer_symbol()

◆ hoc_symbol_tolerance()

◆ jacobian()

◆ linmod_extra_eqn_count()

◆ maxorder()

◆ maxstate_thread()

◆ maxstep()

◆ mfree()

◆ minit()

◆ minstep()

◆ msetup()

◆ msolve()

◆ msolve_lvardt()

◆ msolve_thread()

◆ msolve_thread_part1()

◆ msolve_thread_part2()

◆ msolve_thread_part3()

◆ n_record()

◆ n_remove()

◆ ncs_netcons()

◆ netconlist()

◆ nrn_atol()

◆ nrn_diam_change_count()

◆ nrn_extra_scatter_gather()

◆ nrn_hoc2fixed_step()

◆ nrn_hoc2fun()

◆ nrn_hoc2gather_y()

◆ nrn_hoc2scatter_y()

◆ nrn_modeltype()

◆ nrn_structure_change_count()

◆ order()

◆ peq()

◆ poolshrink()

◆ queue_mode()

◆ re_init()

◆ rtol()

◆ simgraph_remove()

◆ solve()

◆ spikestat()

◆ state_magnitudes()