.. _exercises2018: NEURON Course Exercises ======================= These exercises are adapted from the 2018 NEURON summer course given in Atlanta, Georgia. 1. :ref:`intro_to_gui` * Lipid bilayer model 2. :ref:`interactive_modeling` * Squid axon model 3. :ref:`the_cellbuilder` * Constructing a ball and stick model, saving session files 4. :ref:`using_morphometric_data` * The Import3D tool 5. :ref:`neuron_scripting_exercises` 6. :ref:`using_nmodl_files` * Single compartment model with HHk mechanism 7. :ref:`using_modeldb_and_modelview` * Neuroinformatics tools for finding and understanding models 8. :ref:`rxd_exercises` 9. :ref:`specifying_inhomogeneous_channel_distributions_with_the_cellbuilder` 10. :ref:`custom_initialization` 11. :ref:`introduction_to_the_linear_circuit` * A two-electrode voltage clamp 12. :ref:`state_and_parameter_discontinuities` 13. :ref:`Bulletin board parallelization ` * Speed up embarrassingly parallel tasks 14. :ref:`hoc_exercises` * Introduction to the HOC programming language 15. :ref:`multithread_parallelization` 16. :ref:`Networks: discrete event simulations with artificial cells ` * Introduction to the Network Builder 17. :ref:`Networks: continuous simulation of nets with biophysical model cells ` * Network ready cells from the CellBuilder 18. :ref:`Hopfield-Brody network in Python ` 19. :ref:`MPI Parallelization ` 20. :ref:`using_nsg_portal` 21. :ref:`numerical_methods_exercises` 22. :ref:`electrotonic_analysis` .. toctree:: :hidden: intro_to_gui.rst interactive_modeling.rst the_cellbuilder.rst neuron_scripting_exercises.rst using_morphometric_data using_nmodl_files.rst using_modeldb_and_modelview.rst rxd_exercises.rst specifying_inhomogeneous_channel_dis.rst custom-initialization.rst introduction_to_the_linear_circuit.rst state_and_parameter_discontinuities.rst batch_runs_with_bulletin_board.rst hoc_exercises.rst multithread_parallelization.rst intro_to_the_network_builder.rst network_ready_cells_from_the_cellb.rst hopfield_brody_network_in_python.rst mpi_parallelization.rst using_nsg_portal.rst numerical-methods-exercises.rst electrotonic_analysis.rst